The special counsel's office spent $3,213,695, according to the report, and it also disclosed spending by Justice Department "components that support" the special counsel's office.
Mr Mueller is investigating alleged Russian attempts to influence the 2016 USA presidential election and potential collusion by Trump aides.
A 2000 General Accounting Office report that detailed those figures said that $36 million came from congressional appropriations and $16 million from other federal agency costs.
During his election campaign, Mr Trump said he would seek to improve ties with Russian President Vladimir Putin, which were strained during former president Barack Obama's administration.More news: Truck drivers required to use electronic logs by December 18
Deutsche Bank, which has loaned the Trump organisation hundreds of millions of dollars for real estate ventures, said it would not comment on any of its clients. Earlier this year, Democrats in the House of Representatives asked Deutsche Bank to provide details on Trump's finances, but the bank wouldn't do that without a formal request.
Deutsche Bank had been one of Trump's most reliable lenders. Mueller's investigation had expanded to examine a broad range of transactions involving the president's businesses, including dealings by his son-in-law, Jared Kushner, and Commerce Secretary Wilbur Ross, a person familiar with the probe told Bloomberg News after the publication of the Times interview.
In January, Deutsche Bank agreed to pay US$630 million in fines for organising US$10 billion in sham trades that could have been used to launder money out of Russian Federation.
Many media outlets included the denial from Trump's attorney in their reports, but the idea of his bank being subpoenaed for his financial records makes for far juicier headlines.